start_lost [SO_0002012]
A codon variant that changes at least one base of the canonical start codon. Request from Uma Devi Paila, UVA. This term should not be applied to incomplete transcripts.
Note
This page displays the raw VFB json record for this term. Please use the link below to open the term inside the Virtual Fly Brain viewerVFB Term Json
{
"term": {
"core": {
"iri": "http://purl.obolibrary.org/obo/SO_0002012",
"symbol": "",
"types": [
"Entity",
"Class"
],
"short_form": "SO_0002012",
"label": "start_lost"
},
"description": [
"A codon variant that changes at least one base of the canonical start codon."
],
"comment": [
"Request from Uma Devi Paila, UVA. This term should not be applied to incomplete transcripts."
]
},
"query": "Get JSON for Class",
"version": "44725ae",
"parents": [
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/SO_0001582",
"types": [
"Entity",
"Class"
],
"short_form": "SO_0001582",
"label": "Initiating Methionine"
},
{
"symbol": "",
"iri": "http://purl.obolibrary.org/obo/SO_0001992",
"types": [
"Entity",
"Class"
],
"short_form": "SO_0001992",
"label": "nonsynonymous_variant"
}
],
"relationships": [],
"xrefs": [],
"anatomy_channel_image": [],
"pub_syn": [
{
"synonym": {
"scope": "has_exact_synonym",
"label": "VEP:start_lost",
"type": ""
},
"pub": {
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
},
{
"synonym": {
"scope": "has_exact_synonym",
"label": "snpEff:START_LOST",
"type": ""
},
"pub": {
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
}
],
"def_pubs": [
{
"core": {
"symbol": "",
"iri": "http://flybase.org/reports/Unattributed",
"types": [
"Entity",
"Individual",
"pub"
],
"short_form": "Unattributed",
"label": ""
},
"FlyBase": "",
"PubMed": "",
"DOI": ""
}
]
}
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